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Write coordinates and cluster assignment to a CSV file

writeResults.Rd

For working with the results outside the app. Settings used: metric, linkage, k

Usage

writeResults(
  cluster,
  cov = NULL,
  covInv = NULL,
  exp = NULL,
  linked,
  linked.cov = NULL,
  linked.covInv = NULL,
  linked.exp = NULL,
  settings,
  filename,
  user_dist = NULL,
  getCoords.space1 = normCoords,
  getCoords.space2 = rawCoords
)

Arguments

cluster

cluster space matrix

cov

covariance matrix

covInv

inverse covariance matrix

exp

observable reference value (e.g. experimental measurement)

linked

linked space matrix

linked.cov

covariance matrix

linked.covInv

inverse covariance matrix

linked.exp

observable reference value (e.g. experimental measurement)

settings

list specifying parameters usually selected in the app

filename

path to write the results file to

user_dist

input distance matrix (optional)

getCoords.space1

function to calculate coordinates on clustering space

getCoords.space2

function to calculate coordinates on linked space

Value

No return value, called for writing file

Examples

file <- tempfile()
writeResults(
  cluster = Bikes$space1, linked = Bikes$space2,
  settings = list(metric = "euclidean", linkage = "ward.D2", k = 4), filename = file
)
file.remove(file)
#> [1] TRUE